PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000170673
Common NameLOC103442162, SUP9a
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 180aa    MW: 20279.2 Da    PI: 6.507
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000170673genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000193658123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C  C++ F++   L  H++ H
  MDP0000170673 36 YECVFCKRGFTTAQALGGHMNIH 58
                   99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.06E-63463No hitNo description
Gene3DG3DSA:3.30.160.601.2E-43462IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.8E-53661IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.4273663IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MKSNHQDHQD SKTSSTDEEA DHQPHANDDM GTGRSYECVF CKRGFTTAQA LGGHMNIHRK  60
ERAKTRPSSI PTSLASSIST AVEDQNHPRA ALYRAIQSYR PGVLRPPHAN HISDEDLCAR  120
NYIPRHRNLL RDDHRDWRSG SSLSLGMGQP SDDYKERVIN GGLEETDDEL DLELRLGHDP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4184730.0HQ418473.1 Malus x domestica transcriptional regulator superman (SUP9a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288055.11e-133probable transcriptional regulator RABBIT EARS
TrEMBLF6KKG01e-133F6KKG0_MALDO; Transcriptional regulator superman
STRINGPOPTR_0002s04250.13e-38(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.18e-13C2H2 family protein